PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29966.m000228
Common NameRCOM_1146750
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YB
Protein Properties Length: 197aa    MW: 21214.3 Da    PI: 6.4191
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29966.m000228genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.53.9e-5824119297
          NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                    +eqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplk+yl+k+re+egek
  29966.m000228  24 KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKFREMEGEK 119
                    79********************************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-5617137IPR009072Histone-fold
SuperFamilySSF471139.16E-4226138IPR009072Histone-fold
PfamPF008085.6E-282993IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.8E-215775No hitNo description
PROSITE patternPS0068506076IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.8E-217694No hitNo description
PRINTSPR006156.8E-2195113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MADSDNESGG HNNNNANSES SSLKEQDRFL PIANVSRIMK KALPANAKIS KDAKETVQEC  60
VSEFISFITG EASDKCQREK RKTINGDDLL WAMTTLGFEE YVEPLKIYLH KFREMEGEKT  120
AGMGGGSSSS RPSEREYGGG GDGSSVNTGN SEGMFGGGGL YGGMMMMGQQ HQHQHHHQHQ  180
QGHLYGSGGG ASSGRPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4923114192Transcription factor HapC (Eurofung)
4g92_B6e-4923114192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101291e-93AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015581637.11e-141PREDICTED: nuclear transcription factor Y subunit B-3 isoform X2
SwissprotO233107e-73NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLB9SWQ91e-145B9SWQ9_RICCO; Ccaat-binding transcription factor subunit A, putative
STRINGPOPTR_0016s00780.19e-88(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-65nuclear factor Y, subunit B3